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    yfgH lipoprotein YfgH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945709, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yfgH
    Official Full Name
    lipoprotein YfgH
    Primary source
    ECOCYC:G7316
    Locus tag
    b2505
    See related
    ASAP:ABE-0008250
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2501
    Summary
    First 21 aa are a type II signal peptide. [More information is available at EcoGene: EG14204].
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    Genomic context

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    Sequence:
    NC_000913.3 (2629792..2630310)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cyclic di-GMP phosphodiesterase PdeF Neighboring gene nickel/cobalt stress response protein YfgG Neighboring gene nalidixic acid resistance protein YfgI Neighboring gene GMP synthetase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipoprotein YfgH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2629792..2630310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417000.1 lipoprotein YfgH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417000.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A066Q2U7, A0A0J2BI47, A0A0J3VSF6, A0A0K5A3Q0, A0A152ZQ66, A0A376SBU6, A0A6N8NA21, A0A829L2U9, A0AAN1VLB3, A0AAV3I3H2, A7ZPU9
      Conserved Domains (1) summary
      cl10470
      Location:5 → 164
      Rick_17kDa_Anti; Glycine zipper 2TM domain
    Nucleotide Protein
    Heading Accession and Version

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