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    ygiC putative acid--amine ligase YgiC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947249, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygiC
    Official Full Name
    putative acid--amine ligase YgiC
    Primary source
    ECOCYC:EG11165
    Locus tag
    b3038
    See related
    ASAP:ABE-0009971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3029
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    Genomic context

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    Sequence:
    NC_000913.3 (3180421..3181581)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane channel TolC Neighboring gene DUF1190 domain-containing protein YgiB Neighboring gene 4,5-DOPA dioxygenase extradiol Neighboring gene divalent metal ion transporter ZupT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity. Pederick JL, et al. Biochemistry, 2023 Feb 21. PMID 36745518
    2. Nucleotide sequence of a region duplicated in Escherichia coli toc mutants. Yang TP, et al. Biochim Biophys Acta, 1992 Mar 24. PMID 1314093
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Escherichia coli YgiC and YjfC Possess Peptide horizontal line Spermidine Ligase Activity.
      Title: Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative acid--amine ligase YgiC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3180421..3181581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417510.1 putative acid--amine ligase YgiC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417510.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376RDP2, A0A8T6PXL7, A0AAN3IJ44
      Conserved Domains (1) summary
      COG0754
      Location:1 → 386
      Gsp; Glutathionylspermidine synthase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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