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    xylF xylose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948090, updated on 3-Dec-2024

    Summary

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    Official Symbol
    xylF
    Official Full Name
    xylose ABC transporter periplasmic binding protein
    Primary source
    ECOCYC:EG20252
    Locus tag
    b3566
    See related
    ASAP:ABE-0011646
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3555; xylT
    Summary
    XylF is the periplasmic binding component of the XylFGH xylose ABC transporter. [More information is available at EcoCyc: EG20252].
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    Genomic context

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    Sequence:
    NC_000913.3 (3731131..3732123)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene xylulokinase Neighboring gene ncRNA Neighboring gene xylose isomerase Neighboring gene xylose ABC transporter ATP binding subunit Neighboring gene xylose ABC transporter membrane subunit Neighboring gene DNA-binding transcriptional dual regulator XylR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and properties of a periplasmic D-xylose-binding protein from Escherichia coli K-12. Ahlem C, et al. J Biol Chem, 1982 Mar 25. PMID 7037773
    2. Location of a structural gene for xylose-H+ symport at 91 min on the linkage map of Escherichia coli K12. Davis EO, et al. J Biol Chem, 1984 Feb 10. PMID 6363412
    3. Utilization of D-ribose through D-xylose transporter. Song S, et al. FEMS Microbiol Lett, 1998 Jun 15. PMID 9673030
    4. Cloning and characterization of the xyl genes from Escherichia coli. Rosenfeld SA, et al. Mol Gen Genet, 1984. PMID 6330500
    5. Sugar transporters in efficient utilization of mixed sugar substrates: current knowledge and outlook. Jojima T, et al. Appl Microbiol Biotechnol, 2010 Jan. PMID 19838697

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables monosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables monosaccharide binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables monosaccharide binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within D-ribose transmembrane transport EXP
    Inferred from Experiment
    more info
    		 PubMed 
    acts_upstream_of_or_within D-xylose metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in D-xylose transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within D-xylose transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in D-xylose transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    xylose ABC transporter periplasmic binding protein
    NP_418023.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3731131..3732123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418023.1 xylose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418023.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FVC6, A0A8S7ILG0
      Conserved Domains (1) summary
      PRK10355
      Location:1 → 330
      xylF; D-xylose ABC transporter substrate-binding protein
    Nucleotide Protein
    Heading Accession and Version

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