U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yidX putative lipoprotein YidX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948202, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yidX
    Official Full Name
    putative lipoprotein YidX
    Primary source
    ECOCYC:EG11719
    Locus tag
    b3696
    See related
    ASAP:ABE-0012084
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3688
    Summary
    First 23 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG11719].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3875438..3876094)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene D-galactonate dehydratase Neighboring gene 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Neighboring gene 2-dehydro-3-deoxygalactonokinase Neighboring gene DNA-binding transcriptional regulator DgoR Neighboring gene sugar phosphatase YidA Neighboring gene DUF937 domain-containing protein YidB

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex. Su'etsugu M, et al. J Biol Chem, 2005 Feb 25. PMID 15611053
    2. Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Kang MJ, et al. Biotechnol Bioeng, 2005 Sep 5. PMID 15898075
    3. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli. Tavazoie S, et al. Nat Biotechnol, 1998 Jun. PMID 9624689
    4. A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Homma K, et al. Gene, 2002 Jul 10. PMID 12234664
    5. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative lipoprotein YidX

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3875438..3876094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026240.1 putative lipoprotein YidX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026240.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7TQE0
      Conserved Domains (1) summary
      PRK10215
      Location:2 → 218
      PRK10215; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.