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    rbsD D-ribose pyranase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948267, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rbsD
    Official Full Name
    D-ribose pyranase
    Primary source
    ECOCYC:EG10817
    Locus tag
    b3748
    See related
    ASAP:ABE-0012256
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3742; rbsP
    Summary
    RbsD is a ribose pyranase; it binds specifically to the -furan and -pyran forms of ribose and increases the exchange rate between the two forms . [More information is available at EcoCyc: EG10817].
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    Genomic context

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    Sequence:
    NC_000913.3 (3933351..3933770)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein ViaA Neighboring gene regulatory ATPase RavA Neighboring gene K(+):H(+) symporter Kup Neighboring gene ribose ABC transporter ATP binding subunit Neighboring gene ribose ABC transporter membrane subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Disassembly intermediates of RbsD protein remain oligomeric despite the loss of an intact secondary structure. Feng Y, et al. Sci China C Life Sci, 2009 Nov. PMID 19937196
    2. The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli. Zheng J, et al. J Basic Microbiol, 2020 Feb. PMID 31588591
    3. A mutated PtsG, the glucose transporter, allows uptake of D-ribose. Oh H, et al. J Biol Chem, 1999 May 14. PMID 10318813
    4. Ribose utilization with an excess of mutarotase causes cell death due to accumulation of methylglyoxal. Kim I, et al. J Bacteriol, 2004 Nov. PMID 15489434, Free PMC Article
    5. A role of RnlA in the RNase LS activity from Escherichia coli. Otsuka Y, et al. Genes Genet Syst, 2007 Aug. PMID 17895580

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli.
      Title: The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli.
    2. These novel observations strongly suggest that the assembly of oligomeric proteins such as RbsD may occur before the completion of subunit folding.
      Title: Disassembly intermediates of RbsD protein remain oligomeric despite the loss of an intact secondary structure.
    3. rbsD was found to mainly exist as decamers with a small portion of apparently larger oligomeric forms, both of which are able to refold/reassemble effectively in a spontaneous way after being completely unfolded
      Title: Stepwise disassembly and apparent nonstepwise reassembly for the oligomeric RbsD protein.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables D-ribose pyranase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables D-ribose pyranase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables intramolecular transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables monosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in D-ribose catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in D-ribose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within D-ribose catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in monosaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    D-ribose pyranase
    NP_418204.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3933351..3933770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418204.2 D-ribose pyranase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418204.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AMH6
      Conserved Domains (1) summary
      PRK11797
      Location:1 → 139
      PRK11797; D-ribose pyranase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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