U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rhaB rhamnulokinase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948399, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rhaB
    Official Full Name
    rhamnulokinase
    Primary source
    ECOCYC:EG11868
    Locus tag
    b3904
    See related
    ASAP:ABE-0012738
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3897
    Summary
    L-rhamnulose kinase catalyzes the second step of rhamnose degradation, the phosphorylation of rhamnulose. [More information is available at EcoCyc: EG11868].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (4095979..4097448, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-rhamnose mutarotase Neighboring gene rhamnulose-1-phosphate aldolase Neighboring gene L-rhamnose isomerase Neighboring gene DNA-binding transcriptional activator RhaS Neighboring gene DNA-binding transcriptional activator RhaR Neighboring gene rhamnose/lyxose:H(+) symporter

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Substrate spectrum of L-rhamnulose kinase related to models derived from two ternary complex structures. Grueninger D, et al. FEBS Lett, 2007 Jun 26. PMID 17568582
    2. Structure and reaction mechanism of L-rhamnulose kinase from Escherichia coli. Grueninger D, et al. J Mol Biol, 2006 Jun 9. PMID 16674975
    3. THE PURIFICATION AND PROPERTIES OF L-RHAMNULOKINASE. CHIU TH, et al. Biochim Biophys Acta, 1964 Dec 23. PMID 14264882
    4. THE METABOLISM OF L-RHAMNOSE IN ESCHERICHIA COLI. II. L-RHAMNULOSE KINASE. TAKAGI Y, et al. Biochim Biophys Acta, 1964 Oct 23. PMID 14243778
    5. Metabolism of L-rhamnose by Escherichia coli. II. The phosphorylation of L-rhamnulose. WILSON DM, et al. J Bacteriol, 1957 Mar. PMID 13416205, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The structure of rhaB in a ternary complex with its substrates ADP and L-rhamnulose has been determined at 1.55A resolution.
      Title: Substrate spectrum of L-rhamnulose kinase related to models derived from two ternary complex structures.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycerol kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rhamnulokinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rhamnulokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rhamnose catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rhamnose catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in rhamnose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within rhamnose catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rhamnose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    rhamnulokinase
    NP_418340.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4095979..4097448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418340.1 rhamnulokinase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418340.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAI9E6C9
      Conserved Domains (1) summary
      PRK10640
      Location:19 → 489
      rhaB; rhamnulokinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.