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    yjbF lipoprotein YjbF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948533, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjbF
    Official Full Name
    lipoprotein YjbF
    Primary source
    ECOCYC:EG11924
    Locus tag
    b4027
    See related
    ASAP:ABE-0013172
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4019
    Summary
    Overexpression of the yjbEFGH operon alters colony morphology and leads to production of a novel extracellular polysaccharide (Ferrieres, 2007). yjbF and ymcC are paralogs. [More information is available at EcoGene: EG11924]. Sequence similarity suggests that YjbF may be a lipoprotein and/or an outer membrane porin . [More information is available at EcoCyc: EG11924].
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    Genomic context

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    Sequence:
    NC_000913.3 (4236262..4236900)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate isomerase Neighboring gene uncharacterized protein YjbE Neighboring gene capsule biosynthesis GfcC family protein YjbG Neighboring gene putative lipoprotein YjbH Neighboring gene PF17089 family protein YjbT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Induction of the yjbEFGH operon is regulated by growth rate and oxygen concentration. Ionescu M, et al. Arch Microbiol, 2008 Mar. PMID 17957352
    2. Overproduction of exopolysaccharides by an Escherichia coli K-12 rpoS mutant in response to osmotic stress. Ionescu M, et al. Appl Environ Microbiol, 2009 Jan. PMID 18997023, Free PMC Article
    3. The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface. Ferrières L, et al. Mol Microbiol, 2003 Dec. PMID 14651646
    4. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    5. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within polysaccharide biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipoprotein YjbF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4236262..4236900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418451.4 lipoprotein YjbF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418451.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377A6Y6, A0A8T5ZL61
      Conserved Domains (1) summary
      pfam11102
      Location:24 → 206
      YjbF; Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
    Nucleotide Protein
    Heading Accession and Version

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