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    ycaP DUF421 domain-containing protein YcaP [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945525, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycaP
    Official Full Name
    DUF421 domain-containing protein YcaP
    Primary source
    ECOCYC:G6469
    Locus tag
    b0906
    See related
    ASAP:ABE-0003089
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0897
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    Genomic context

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    Sequence:
    NC_000913.3 (956762..957454)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene formate channel FocA Neighboring gene ribosomal protein S12 methylthiotransferase accessory factor YcaO Neighboring gene phosphoserine/phosphohydroxythreonine aminotransferase Neighboring gene 3-phosphoshikimate 1-carboxyvinyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF421 domain-containing protein YcaP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      956762..957454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415426.1 DUF421 domain-containing protein YcaP [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415426.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A447XZS1
      Conserved Domains (1) summary
      COG2323
      Location:17 → 228
      YcaP; Uncharacterized membrane protein YcaP, DUF421 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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