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    rpnC recombination-promoting nuclease RpnC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944781, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rpnC
    Official Full Name
    recombination-promoting nuclease RpnC
    Primary source
    ECOCYC:EG11748
    Locus tag
    b0132
    See related
    ASAP:ABE-0000463
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0131; yadD
    Summary
    Although yadD was predicted to have a sigma 28 (FliA) promoter, it can not be transcribed in vitro with sigma 28 holoenzyme (Yu, 2006). [More information is available at EcoGene: EG11748]. YadD, YjiP, YjiQ, YhgA, and YafD have similarity to each other . [More information is available at EcoCyc: EG11748].
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    Genomic context

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    Sequence:
    NC_000913.3 (146968..147870)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative polysaccharide deacetylase lipoprotein YadE Neighboring gene aspartate 1-decarboxylase proenzyme Neighboring gene pantothenate synthetase Neighboring gene 3-methyl-2-oxobutanoate hydroxymethyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and sequence of the Escherichia coli panBCD gene cluster. Merkel WK, et al. FEMS Microbiol Lett, 1996 Oct 1. PMID 8837478
    2. In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli. Yu HH, et al. J Bacteriol, 2006 Dec. PMID 16997971, Free PMC Article
    3. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article
    4. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    5. Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer. Kingston AW, et al. J Bacteriol, 2017 Apr 1. PMID 28096446, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    recombination-promoting nuclease RpnC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      146968..147870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414674.1 recombination-promoting nuclease RpnC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414674.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7T2MXH6
      Conserved Domains (1) summary
      pfam04754
      Location:7 → 208
      Transposase_31; Putative transposase, YhgA-like
    Nucleotide Protein
    Heading Accession and Version

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