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    ybeL DUF1451 domain-containing protein YbeL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945252, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybeL
    Official Full Name
    DUF1451 domain-containing protein YbeL
    Primary source
    ECOCYC:EG12851
    Locus tag
    b0643
    See related
    ASAP:ABE-0002199
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0636
    Summary
    A fraction of full length YbeL is naturally ssrA-tagged. [More information is available at EcoGene: EG12851]. YbeL is subject to SsrA-mediated C-terminal tagging with a degradation signal while the ribosome stalls at the stop codon . [More information is available at EcoCyc: EG12851].
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    Genomic context

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    Sequence:
    NC_000913.3 (675018..675500)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA polymerase III subunit delta Neighboring gene lipopolysaccharide assembly protein LptE Neighboring gene leucine--tRNA ligase Neighboring gene Sel1 repeat-containing protein YbeQ Neighboring gene DUF1266 domain-containing protein YbeR Neighboring gene J domain-containing protein DjlB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination. Hayes CS, et al. J Biol Chem, 2002 Sep 13. PMID 12105207
    2. Molecular cloning and nucleotide sequence of the gene for Escherichia coli leucyl-tRNA synthetase. Härtlein M, et al. Nucleic Acids Res, 1987 Dec 23. PMID 3320963, Free PMC Article
    3. Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons. Roche ED, et al. J Biol Chem, 2001 Jul 27. PMID 11373298
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF1451 domain-containing protein YbeL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      675018..675500
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415176.1 DUF1451 domain-containing protein YbeL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415176.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7JRX6
      Conserved Domains (1) summary
      PRK11032
      Location:1 → 160
      PRK11032; zinc ribbon-containing protein
    Nucleotide Protein
    Heading Accession and Version

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