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    ybjM putative inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945477, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybjM
    Official Full Name
    putative inner membrane protein
    Primary source
    ECOCYC:G6446
    Locus tag
    b0848
    See related
    ASAP:ABE-0002891
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0839
    Summary
    YbjM is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G6446].
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    Genomic context

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    Sequence:
    NC_000913.3 (890089..890466)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative transport protein YbjL Neighboring gene reduced glutaredoxin 1 Neighboring gene DUF1418 domain-containing protein YbjC Neighboring gene NADPH-dependent nitro/quinone reductase NfsA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. Zheng M, et al. J Bacteriol, 2001 Aug. PMID 11443091, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative inner membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      890089..890466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415369.1 putative inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415369.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1NDG3
      Conserved Domains (1) summary
      pfam11045
      Location:3 → 118
      YbjM; Putative inner membrane protein of Enterobacteriaceae
    Nucleotide Protein
    Heading Accession and Version

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