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    yfgJ zinc ribbon domain-containing protein YfgJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946984, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfgJ
    Official Full Name
    zinc ribbon domain-containing protein YfgJ
    Primary source
    ECOCYC:G7318
    Locus tag
    b2510
    See related
    ASAP:ABE-0008266
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2506
    Summary
    YfgJ is a member of DUF1407 and has 2 putative C4-type zinc fingers at positions 5-24 and 34-54. [More information is available at EcoGene: EG14206]. A yfgJ mutant has a defect in swarming, but not swimming motility . [More information is available at EcoCyc: G7318].
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    Genomic context

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    Sequence:
    NC_000913.3 (2635599..2635814, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene GMP synthetase Neighboring gene inosine 5'-monophosphate dehydrogenase Neighboring gene exodeoxyribonuclease VII subunit XseA Neighboring gene 50S ribosomal subunit stability factor Neighboring gene outer membrane protein assembly factor BamB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc ribbon domain-containing protein YfgJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2635599..2635814 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417005.2 zinc ribbon domain-containing protein YfgJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417005.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2G4V8, A0A8H9VPL9
      Conserved Domains (1) summary
      pfam07191
      Location:5 → 68
      zinc-ribbons_6
    Nucleotide Protein
    Heading Accession and Version

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