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    yqjF DoxX family protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947608, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yqjF
    Official Full Name
    DoxX family protein
    Primary source
    ECOCYC:G7615
    Locus tag
    b3101
    See related
    ASAP:ABE-0010200
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3092
    Summary
    YphA and YqjF are paralogs. [More information is available at EcoGene: EG12745]. YqjF is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G7615].
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    Genomic context

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    Sequence:
    NC_000913.3 (3250562..3250954)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ribosome- and membrane-associated DUF883 domain-containing protein YqjD Neighboring gene inner membrane protein YqjE Neighboring gene PF13997 family protein YqjK Neighboring gene glutathionyl-hydroquinone reductase YqjG Neighboring gene putative inner membrane protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DoxX family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3250562..3250954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417572.2 DoxX family protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417572.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AA36L0S8, Q1R6M9
      Conserved Domains (1) summary
      COG2259
      Location:1 → 130
      DoxX; Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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