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    yiaU putative DNA-binding transcriptional regulator YiaU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948107, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yiaU
    Official Full Name
    putative DNA-binding transcriptional regulator YiaU
    Primary source
    ECOCYC:EG12289
    Locus tag
    b3585
    See related
    ASAP:ABE-0011710
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3574
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    Genomic context

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    Sequence:
    NC_000913.3 (3751992..3752966)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene outer membrane protein YiaT Neighboring gene putative membrane fusion protein YiaV Neighboring gene DUF3302 domain-containing protein YiaW Neighboring gene aldehyde dehydrogenase B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    3. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
    4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YiaU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3751992..3752966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418042.1 putative DNA-binding transcriptional regulator YiaU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418042.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FVN9
      Conserved Domains (1) summary
      COG0583
      Location:6 → 309
      LysR; DNA-binding transcriptional regulator, LysR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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