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    lgoD L-galactonate oxidoreductase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948883, updated on 17-Dec-2024

    Summary

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    Official Symbol
    lgoD
    Official Full Name
    L-galactonate oxidoreductase
    Primary source
    ECOCYC:G7945
    Locus tag
    b4358
    See related
    ASAP:ABE-0014294
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4348; yjjN
    Summary
    AFMB Structural Genomics target Number 62 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12590]. YjjN is a predicted L-galactonate oxidoreductase that is required for growth on L-galactonate as the sole carbon source under high-throughput growth conditions with limited aeration . [More information is available at EcoCyc: G7945].
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    Genomic context

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    Sequence:
    NC_000913.3 (4595990..4597012)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene galactonate:H(+) symporter Neighboring gene putative DNA-binding transcriptional regulator LgoR Neighboring gene phosphoglycerol transferase I Neighboring gene DUF2501 domain-containing protein YjjA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pathway for L-galactonate catabolism in Escherichia coli K-12. Cooper RA. FEBS Lett, 1979 Jul 15. PMID 381020
    2. The yjjN of E. coli codes for an L-galactonate dehydrogenase and can be used for quantification of L-galactonate and L-gulonate. Kuivanen J, et al. Appl Biochem Biotechnol, 2014 Aug. PMID 24861318
    3. Systems approach to refining genome annotation. Reed JL, et al. Proc Natl Acad Sci U S A, 2006 Nov 14. PMID 17088549, Free PMC Article
    4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within L-galactonate catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-galactonate oxidoreductase
    NP_418778.4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4595990..4597012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418778.4 L-galactonate oxidoreductase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418778.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GJF4, A0A376FST7
      Conserved Domains (1) summary
      cd08261
      Location:4 → 340
      Zn_ADH7; Alcohol dehydrogenases of the MDR family
    Nucleotide Protein
    Heading Accession and Version

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