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    ybdM ParB-like nuclease domain-containing protein YbdM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945206, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybdM
    Official Full Name
    ParB-like nuclease domain-containing protein YbdM
    Primary source
    ECOCYC:G6330
    Locus tag
    b0601
    See related
    ASAP:ABE-0002071
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0595
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    Genomic context

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    Sequence:
    NC_000913.3 (634747..635376, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene hydroxycarboxylate dehydrogenase A Neighboring gene methionine transaminase Neighboring gene putative PAPS reductase/DUF3440 domain-containing protein YbdN Neighboring gene putative LysR family DNA-binding transcriptional regulator YbdO Neighboring gene protein sulfenic acid reductase and chaperone DsbG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxygen levels IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ParB-like nuclease domain-containing protein YbdM

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      634747..635376 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415134.1 ParB-like nuclease domain-containing protein YbdM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415134.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3L9HMP1
      Conserved Domains (1) summary
      cd16397
      Location:46 → 145
      IbrB_like; immunoglobulin-binding regulator IbrB activates eib genes
    Nucleotide Protein
    Heading Accession and Version

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