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    gfcD putative lipoprotein GfcD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945588, updated on 3-Dec-2024

    Summary

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    Official Symbol
    gfcD
    Official Full Name
    putative lipoprotein GfcD
    Primary source
    ECOCYC:G6505
    Locus tag
    b0984
    See related
    ASAP:ABE-0003319
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0975; ymcA
    Summary
    Function characterized in enteropathogenic Escherichia coli (EPEC). gfcD and yjbH are paralogs. [More information is available at EcoGene: EG13729]. The operon encoding YmcD, YmcC, YmcB, YmcA, YzzZ, Etp, and Etk was characterized in the enteropathogenic Escherichia coli strain O127:H6. [More information is available at EcoCyc: G6505].
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    Genomic context

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    Sequence:
    NC_000913.3 (1045849..1047945, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein-tyrosine kinase Etk Neighboring gene phosphotyrosine-protein phosphatase Etp Neighboring gene putative exopolysaccharide export lipoprotein GfcE Neighboring gene capsule biosynthesis GfcC family protein Neighboring gene lipoprotein GfcB Neighboring gene threonine-rich inner membrane protein GfcA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655. Brokx SJ, et al. J Bacteriol, 2004 May. PMID 15126489, Free PMC Article
    2. Biosynthesis and assembly of capsular polysaccharides in Escherichia coli. Whitfield C. Annu Rev Biochem, 2006. PMID 16756484
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative lipoprotein GfcD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1045849..1047945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415504.1 putative lipoprotein GfcD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415504.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WX80
      Conserved Domains (1) summary
      pfam06082
      Location:33 → 691
      YjbH; Exopolysaccharide biosynthesis protein YbjH
    Nucleotide Protein
    Heading Accession and Version

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