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    ymgC protein YmgC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945090, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ymgC
    Official Full Name
    protein YmgC
    Primary source
    ECOCYC:G6607
    Locus tag
    b1167
    See related
    ASAP:ABE-0003915
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1154
    Summary
    Blue light activation of the YgcE anti-repressor relieves YcgF repression of the cold-shock RpoS-activated small protein operon ycgZ-ymgA-ariR-ymgC operon (Tschowr, 2009). [More information is available at EcoGene: EG14291]. Deletion of ymgC increases biofilm formation and motility . [More information is available at EcoCyc: G6607].
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    Genomic context

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    Sequence:
    NC_000913.3 (1216748..1216996)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative two-component system connector protein YmgA Neighboring gene putative two-component system connector protein AriR Neighboring gene putative c-di-GMP phosphodiesterase PdeG Neighboring gene inner membrane protein YmgF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential gene expression shows natural brominated furanones interfere with the autoinducer-2 bacterial signaling system of Escherichia coli. Ren D, et al. Biotechnol Bioeng, 2004 Dec 5. PMID 15470704
    2. Low temperature (23 degrees C) increases expression of biofilm-, cold-shock- and RpoS-dependent genes in Escherichia coli K-12. White-Ziegler CA, et al. Microbiology (Reading), 2008 Jan. PMID 18174134
    3. Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. Kannan G, et al. BMC Microbiol, 2008 Feb 26. PMID 18302792, Free PMC Article
    4. Indole is an inter-species biofilm signal mediated by SdiA. Lee J, et al. BMC Microbiol, 2007 May 18. PMID 17511876, Free PMC Article
    5. The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli. Tschowri N, et al. Genes Dev, 2009 Feb 15. PMID 19240136, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YmgC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1216748..1216996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415685.1 protein YmgC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415685.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6QH59, A0A8T6QIU7
    Nucleotide Protein
    Heading Accession and Version

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