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    yfaX putative DNA-binding transcriptional regulator YfaX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944752, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfaX
    Official Full Name
    putative DNA-binding transcriptional regulator YfaX
    Primary source
    ECOCYC:G7161
    Locus tag
    b2248
    See related
    ASAP:ABE-0007438
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2241
    Summary
    YfaX probably regulates the yfaXWVU operon. [More information is available at EcoGene: EG14086].
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    Genomic context

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    Sequence:
    NC_000913.3 (2361429..2362211, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YfaV Neighboring gene L-rhamnonate dehydratase Neighboring gene IPR008135 CinA family protein YfaY Neighboring gene putative porin YfaZ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of enzymatic activities in the enolase superfamily: L-rhamnonate dehydratase. Rakus JF, et al. Biochemistry, 2008 Sep 23. PMID 18754693, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YfaX

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2361429..2362211 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416751.1 putative DNA-binding transcriptional regulator YfaX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416751.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6BM91
      Conserved Domains (1) summary
      COG1414
      Location:8 → 251
      IclR; DNA-binding transcriptional regulator, IclR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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