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    rayT REP-associated tyrosine transposase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944913, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rayT
    Official Full Name
    REP-associated tyrosine transposase
    Primary source
    ECOCYC:G6112
    Locus tag
    b0228
    See related
    ASAP:ABE-0000779
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0229; yafM
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    Genomic context

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    Sequence:
    NC_000913.3 (247637..248134)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene antitoxin/DNA-binding transcriptional repressor DinJ Neighboring gene NlpC/P60 family protein YafL Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Monitoring RAYT activity by surface plasmon resonance biosensor. Bocková M, et al. Anal Bioanal Chem, 2015 May. PMID 25636231
    2. The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease. Messing SA, et al. Nucleic Acids Res, 2012 Oct. PMID 22885300, Free PMC Article
    3. Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences. Ton-Hoang B, et al. Nucleic Acids Res, 2012 Apr. PMID 22199259, Free PMC Article
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA hairpin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables bubble DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded DNA endodeoxyribonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transposase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA transposition IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transposition IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    REP-associated tyrosine transposase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      247637..248134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414763.1 REP-associated tyrosine transposase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414763.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T3UWD3
      Conserved Domains (1) summary
      COG1943
      Location:1 → 135
      RAYT; REP element-mobilizing transposase RayT [Mobilome: prophages, transposons]
    Nucleotide Protein
    Heading Accession and Version

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