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    yaiO outer membrane protein YaiO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945014, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yaiO
    Official Full Name
    outer membrane protein YaiO
    Primary source
    ECOCYC:G6210
    Locus tag
    b0358
    See related
    ASAP:ABE-0001230
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0355
    Summary
    Predicted 19 aa signal peptide is consistent with an observed secB-dependent precursor cleavage that is blocked by azide (Marani, 2006). [More information is available at EcoGene: EG13297]. YaiO localizes to the outer membrane in Escherichia coli . [More information is available at EcoCyc: G6210].
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    Genomic context

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    Sequence:
    NC_000913.3 (380069..380842, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene S-(hydroxymethyl)glutathione dehydrogenase Neighboring gene DNA-binding transcriptional repressor FrmR Neighboring gene pseudo Neighboring gene IS2 element protein InsA Neighboring gene IS2 element protein Neighboring gene putative glucosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    2. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    3. New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Marani P, et al. Protein Sci, 2006 Apr. PMID 16522795, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    outer membrane protein YaiO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      380069..380842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414892.1 outer membrane protein YaiO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414892.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A895NSD2
      Conserved Domains (1) summary
      TIGR04390
      Location:22 → 257
      OMP_YaiO_dom; outer membrane protein, YaiO family
    Nucleotide Protein
    Heading Accession and Version

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