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    ybcK putative recombinase YbcK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945166, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybcK
    Official Full Name
    putative recombinase YbcK
    Primary source
    ECOCYC:G6300
    Locus tag
    b0544
    See related
    ASAP:ABE-0001866
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0535
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    Genomic context

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    Sequence:
    NC_000913.3 (568902..570428)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene multidrug/betaine/choline efflux transporter EmrE Neighboring gene protein YlcJ Neighboring gene periplasmic protein YbcL Neighboring gene putative DNA-binding transcriptional regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA strand exchange activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA strand exchange activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative recombinase YbcK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      568902..570428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415076.1 putative recombinase YbcK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415076.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A7A2L7
      Conserved Domains (3) summary
      cd00338
      Location:6 → 153
      Ser_Recombinase; Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining ...
      pfam07508
      Location:191 → 284
      Recombinase
      pfam13408
      Location:302 → 358
      Zn_ribbon_recom; Recombinase zinc beta ribbon domain
    Nucleotide Protein
    Heading Accession and Version

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