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    ybcV DUF1398 domain-containing protein YbcV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945178, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybcV
    Official Full Name
    DUF1398 domain-containing protein YbcV
    Primary source
    ECOCYC:G6313
    Locus tag
    b0558
    See related
    ASAP:ABE-0001907
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0550
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    Genomic context

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    Sequence:
    NC_000913.3 (579184..579594, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative prophage endopeptidase RzpD Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD Neighboring gene uncharacterized protein YbcW Neighboring gene DUF3950 domain-containing protein YlcI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF1398 domain-containing protein YbcV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      579184..579594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415090.2 DUF1398 domain-containing protein YbcV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415090.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6P989
      Conserved Domains (1) summary
      COG5562
      Location:1 → 134
      YbcV; Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons]
    Nucleotide Protein
    Heading Accession and Version

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