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    ydbD DUF2773 domain-containing protein YdbD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945983, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydbD
    Official Full Name
    DUF2773 domain-containing protein YdbD
    Primary source
    ECOCYC:EG11310
    Locus tag
    b1407
    See related
    ASAP:ABE-0004701
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1400
    Summary
    YdbD may play a role in detoxification of methylglyoxal (MG) and dihydroxyacetone (DHA). [More information is available at EcoCyc: EG11310].
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    Genomic context

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    Sequence:
    NC_000913.3 (1475144..1477450)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene IS30 family transposase Neighboring gene pyridoxal reductase Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene hydrolase/methyltransferase domain-containing protein YnbC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Screening of genes related to methylglyoxal susceptibility. Kim I, et al. J Microbiol, 2007 Aug. PMID 17846588
    2. Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12. Moszer I, et al. Biochimie, 1991 Nov. PMID 1665988
    3. New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide. Justino MC, et al. J Biol Chem, 2005 Jan 28. PMID 15546870
    4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to methylglyoxal EXP
    Inferred from Experiment
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF2773 domain-containing protein YdbD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1475144..1477450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415925.2 DUF2773 domain-containing protein YdbD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415925.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAI9ME17
      Conserved Domains (2) summary
      pfam10971
      Location:688 → 768
      DUF2773; Protein of unknown function (DUF2773)
      pfam04519
      Location:75 → 164
      Bactofilin; Polymer-forming cytoskeletal
    Nucleotide Protein
    Heading Accession and Version

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