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    ynbC hydrolase/methyltransferase domain-containing protein YnbC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945970, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynbC
    Official Full Name
    hydrolase/methyltransferase domain-containing protein YnbC
    Primary source
    ECOCYC:G6729
    Locus tag
    b1410
    See related
    ASAP:ABE-0004708
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1403
    Summary
    Overexpression causes filamentous biofilm formation and non-motility. [More information is available at EcoGene: EG13750].
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    Genomic context

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    Sequence:
    NC_000913.3 (1479138..1480895)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF2773 domain-containing protein YdbD Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene phosphatase domain-containing protein YnbD Neighboring gene FMN dependent NADH:quinone oxidoreductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12. Moszer I, et al. Biochimie, 1991 Nov. PMID 1665988
    2. Cloning and characterization of the hrpA gene in the terC region of Escherichia coli that is highly similar to the DEAH family RNA helicase genes of Saccharomyces cerevisiae. Moriya H, et al. Nucleic Acids Res, 1995 Feb 25. PMID 7899078, Free PMC Article
    3. Group II intron protein localization and insertion sites are affected by polyphosphate. Zhao J, et al. PLoS Biol, 2008 Jun 24. PMID 18593213, Free PMC Article
    4. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
    5. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables lipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    hydrolase/methyltransferase domain-containing protein YnbC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1479138..1480895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415928.1 hydrolase/methyltransferase domain-containing protein YnbC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415928.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376Y8P5
      Conserved Domains (2) summary
      pfam12146
      Location:32 → 265
      Hydrolase_4; Serine aminopeptidase, S33
      pfam12147
      Location:275 → 582
      Methyltransf_20; Putative methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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