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    ydiB quinate/shikimate dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946200, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydiB
    Official Full Name
    quinate/shikimate dehydrogenase
    Primary source
    ECOCYC:EG11234
    Locus tag
    b1692
    See related
    ASAP:ABE-0005651
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1690
    Summary
    YdiB is paralogous to AroE. [More information is available at EcoGene: EG11234]. The ydiB gene encodes a quinate/shikimate dehydrogenase . [More information is available at EcoCyc: EG11234].
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    Genomic context

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    Sequence:
    NC_000913.3 (1773789..1774655)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative exporter YdiM Neighboring gene putative transporter YdiN Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acetate-CoA transferase YdiF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Duncan K, et al. Biochem J, 1986 Sep 1. PMID 3541912, Free PMC Article
    2. The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase. Benach J, et al. J Biol Chem, 2003 May 23. PMID 12624088
    3. Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities. Michel G, et al. J Biol Chem, 2003 May 23. PMID 12637497
    4. Hydroaromatic equilibration during biosynthesis of shikimic acid. Knop DR, et al. J Am Chem Soc, 2001 Oct 24. PMID 11603966
    5. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables quinate 3-dehydrogenase (NAD+) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables quinate 3-dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables quinate 3-dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables shikimate 3-dehydrogenase (NAD+) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables shikimate 3-dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables shikimate 3-dehydrogenase (NADP+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables shikimate 3-dehydrogenase (NADP+) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables shikimate 3-dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in aromatic amino acid family biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chorismate biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in chorismate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in shikimate metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    quinate/shikimate dehydrogenase
    NP_416207.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1773789..1774655
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416207.1 quinate/shikimate dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416207.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M9A9, A0A5B9AJI6
      Conserved Domains (1) summary
      PRK12749
      Location:1 → 288
      PRK12749; quinate/shikimate dehydrogenase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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