U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydiY acid-inducible putative outer membrane protein YdiY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946218, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydiY
    Official Full Name
    acid-inducible putative outer membrane protein YdiY
    Primary source
    ECOCYC:G6928
    Locus tag
    b1722
    See related
    ASAP:ABE-0005744
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1720
    Summary
    The first 25 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13984]. YdiY is a hypothetical protein. [More information is available at EcoCyc: G6928].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1805325..1806083, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein YniD Neighboring gene 6-phosphofructokinase 2 Neighboring gene putative endoribonuclease YdiZ

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    2. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
    3. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    4. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cell outer membrane HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    acid-inducible putative outer membrane protein YdiY

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1805325..1806083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416236.1 acid-inducible putative outer membrane protein YdiY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416236.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7D7PKW1
      Conserved Domains (1) summary
      COG3137
      Location:1 → 252
      YdiY; Putative salt-induced outer membrane protein YdiY [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.