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    ydiZ putative endoribonuclease YdiZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946232, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydiZ
    Official Full Name
    putative endoribonuclease YdiZ
    Primary source
    ECOCYC:G6929
    Locus tag
    b1724
    See related
    ASAP:ABE-0005751
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1722
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    Genomic context

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    Sequence:
    NC_000913.3 (1807400..1807690)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene acid-inducible putative outer membrane protein YdiY Neighboring gene 6-phosphofructokinase 2 Neighboring gene putative kinase YniA Neighboring gene uncharacterized protein YniB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative endoribonuclease YdiZ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1807400..1807690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416238.1 putative endoribonuclease YdiZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416238.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0FSP2
      Conserved Domains (1) summary
      pfam11080
      Location:7 → 93
      GhoS; Endoribonuclease GhoS
    Nucleotide Protein
    Heading Accession and Version

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