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    yoaB RutC family protein YoaB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946357, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yoaB
    Official Full Name
    RutC family protein YoaB
    Primary source
    ECOCYC:G6993
    Locus tag
    b1809
    See related
    ASAP:ABE-0006020
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1807
    Summary
    YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. [More information is available at EcoGene: EG13514]. Transcription of yoaB is induced upon biofilm formation compared to planktonic growth in exponential phase. [More information is available at EcoCyc: G6993].
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    Genomic context

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    Sequence:
    NC_000913.3 (1893367..1893711)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene N(6)-L-threonylcarbamoyladenine synthase, TsaB subunit Neighboring gene putative ATP-dependent 5' to 3' DNA helicase Neighboring gene DUF1889 domain-containing protein YoaC Neighboring gene UFP0181 family protein YoaH

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270
    2. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RutC family protein YoaB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1893367..1893711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416323.4 RutC family protein YoaB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416323.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9B448
      Conserved Domains (1) summary
      cd06150
      Location:10 → 113
      YjgF_YER057c_UK114_like_2; This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence ...
    Nucleotide Protein
    Heading Accession and Version

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