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    rpnB recombination-promoting nuclease RpnB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946787, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rpnB
    Official Full Name
    recombination-promoting nuclease RpnB
    Primary source
    ECOCYC:G7197
    Locus tag
    b2305
    See related
    ASAP:ABE-0007607
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2299; yfcI
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    Genomic context

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    Sequence:
    NC_000913.3 (2422649..2423539, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene dihydroneopterin triphosphate 2'-epimerase Neighboring gene epimerase family protein YfcH Neighboring gene lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit Neighboring gene lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM Neighboring gene lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisQ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer. Kingston AW, et al. J Bacteriol, 2017 Apr 1. PMID 28096446, Free PMC Article
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    recombination-promoting nuclease RpnB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2422649..2423539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416808.1 recombination-promoting nuclease RpnB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416808.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FWX4
      Conserved Domains (1) summary
      PRK09956
      Location:1 → 296
      PRK09956; ISNCY family transposase
    Nucleotide Protein
    Heading Accession and Version

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