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    yidR DUF3748 domain-containing galacturonate catabolism protein YidR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948198, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yidR
    Official Full Name
    DUF3748 domain-containing galacturonate catabolism protein YidR
    Primary source
    ECOCYC:EG11713
    Locus tag
    b3689
    See related
    ASAP:ABE-0012065
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3681
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    Genomic context

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    Sequence:
    NC_000913.3 (3868062..3869309, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene small heat shock protein IbpA Neighboring gene DUF1375 domain-containing putative lipoprotein YidQ Neighboring gene colicin M resistance protein Neighboring gene D-galactonate:H(+) symporter Neighboring gene D-galactonate dehydratase Neighboring gene 2-dehydro-3-deoxy-6-phosphogalactonate aldolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomewide landscape of gene-metabolome associations in Escherichia coli. Fuhrer T, et al. Mol Syst Biol, 2017 Jan 16. PMID 28093455, Free PMC Article
    2. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
    3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within galacturonate catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF3748 domain-containing galacturonate catabolism protein YidR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3868062..3869309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418144.3 DUF3748 domain-containing galacturonate catabolism protein YidR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418144.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1R1K899, A0A1X3JAC7
      Conserved Domains (2) summary
      pfam12566
      Location:74 → 189
      DUF3748; Protein of unknown function (DUF3748)
      NF033523
      Location:272 → 354
      lasso_peptidase; Atxe2 family lasso peptide isopeptidase
    Nucleotide Protein
    Heading Accession and Version

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