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    yidZ DNA-binding transcriptional dual regulator YidZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948227, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yidZ
    Official Full Name
    DNA-binding transcriptional dual regulator YidZ
    Primary source
    ECOCYC:EG11721
    Locus tag
    b3711
    See related
    ASAP:ABE-0012141
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3704
    Summary
    YidZ is in LysR family. yidZ is induced by NO. [More information is available at EcoGene: EG11721]. Levels of yidZ mRNA are increased in cells treated with NO under anaerobic growth conditions. [More information is available at EcoCyc: EG11721].
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    Genomic context

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    Sequence:
    NC_000913.3 (3892765..3893724)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tryptophanase Neighboring gene tryptophan:H(+) symporter TnaB Neighboring gene efflux pump MdtL Neighboring gene putative phosphopantetheinyl transferase Neighboring gene quinone reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide. Justino MC, et al. J Biol Chem, 2005 Jan 28. PMID 15546870
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YidZ and YtfE protect anaerobically grown Escherichia coli against nitric oxide
      Title: New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator YidZ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3892765..3893724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418167.1 DNA-binding transcriptional dual regulator YidZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418167.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7L7EFN5
      Conserved Domains (1) summary
      PRK10216
      Location:1 → 319
      PRK10216; HTH-type transcriptional regulator YidZ
    Nucleotide Protein
    Heading Accession and Version

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