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    TNS1-AS1 TNS1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105373878, updated on 17-Sep-2024

    Summary

    Official Symbol
    TNS1-AS1provided by HGNC
    Official Full Name
    TNS1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40589
    See related
    Ensembl:ENSG00000223923 AllianceGenome:HGNC:40589
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in ovary (RPKM 2.6), fat (RPKM 1.4) and 19 other tissues See more
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    Genomic context

    See TNS1-AS1 in Genome Data Viewer
    Location:
    2q35
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (217978707..217992615)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (218463561..218477469)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (218843430..218857338)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene tensin 1 Neighboring gene microRNA 6809 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218793628-218794497 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218794829-218795372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218798027-218798526 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218799196-218799704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218799705-218800214 Neighboring gene VISTA enhancer hs1764 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218808487-218809332 Neighboring gene uncharacterized LOC124905960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218824713-218825227 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218828984-218829521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218829522-218830058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218843426-218844314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218859337-218859836 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218860238-218861016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218861017-218861794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218866162-218866662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218866663-218867163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17112 Neighboring gene uncharacterized LOC124907982 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12309 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218890081-218890996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218896372-218896928 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218899047-218899580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218899581-218900113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218910221-218910722 Neighboring gene RUN and FYVE domain containing 4 Neighboring gene C-X-C motif chemokine receptor 2 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135524.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010136, DB245334
      Related
      ENST00000450996.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      217978707..217992615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      218463561..218477469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)