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    C10h17orf100 similar to human chromosome 17 open reading frame 100 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100912483, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C10h17orf100provided by RGD
    Official Full Name
    similar to human chromosome 17 open reading frame 100provided by RGD
    Primary source
    RGD:6486589
    See related
    EnsemblRapid:ENSRNOG00000080030 AllianceGenome:RGD:6486589
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C17orf100 (chromosome 17 open reading frame 100). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 26.4), Brain (RPKM 23.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C10h17orf100 in Genome Data Viewer
    Location:
    10q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (57339186..57342233)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (56840451..56843674)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (58784444..58787713)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 17 Neighboring gene mediator complex subunit 31 Neighboring gene solute carrier family 13 member 5 Neighboring gene uncharacterized LOC134480819 Neighboring gene probable serine/threonine-protein kinase drkD-like Neighboring gene XIAP associated factor 1 Neighboring gene F-box protein 39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    similar to human chromosome 17 open reading frame 100; uncharacterized protein C17orf100 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430329.1 → NP_001417258.1  similar to human chromosome 17 open reading frame 100

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I6A7E3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      57339186..57342233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270127.1 → XP_063126197.1  uncharacterized protein C17orf100 homolog

      UniProtKB/TrEMBL
      A0A8I6A7E3

    2. XM_008767908.4 → XP_008766130.1  uncharacterized protein C17orf100 homolog

      See identical proteins and their annotated locations for XP_008766130.1

      UniProtKB/TrEMBL
      A0A8I6A7E3
      Related
      ENSRNOP00000112162.1, ENSRNOT00000163339.1
    Nucleotide Protein Strain
    Heading Accession and Version

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