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    BC006965 cDNA sequence BC006965 [ Mus musculus (house mouse) ]

    Gene ID: 217294, updated on 9-Dec-2024

    Summary

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    Official Symbol
    BC006965provided by MGI
    Official Full Name
    cDNA sequence BC006965provided by MGI
    Primary source
    MGI:MGI:2384955
    See related
    Ensembl:ENSMUSG00000041674 AllianceGenome:MGI:2384955
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in central nervous system; pancreas; sensory organ; skeleton; and submandibular gland primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in limb E14.5 (RPKM 2.2), mammary gland adult (RPKM 0.7) and 7 other tissues See more
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    Genomic context

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    See BC006965 in Genome Data Viewer
    Location:
    11 E2; 11 76.16 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (112554753..112602182, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (112663927..112711356, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31056 Neighboring gene predicted gene, 30337 Neighboring gene STARR-seq mESC enhancer starr_31058 Neighboring gene predicted gene, 53652 Neighboring gene STARR-seq mESC enhancer starr_31059 Neighboring gene STARR-seq mESC enhancer starr_31060 Neighboring gene STARR-seq mESC enhancer starr_31061 Neighboring gene predicted gene, 39461 Neighboring gene STARR-seq mESC enhancer starr_31062 Neighboring gene VISTA enhancer mm634 Neighboring gene STARR-seq mESC enhancer starr_31063 Neighboring gene Sox9 enhancer E250 Neighboring gene Sox9 enhancer E195 Neighboring gene Sox9 enhancer E84 Neighboring gene Sox9 enhancer SOM Neighboring gene Sox9 testis enhancer TES Neighboring gene Sox9 promoter region Neighboring gene predicted gene 11681 Neighboring gene SRY (sex determining region Y)-box 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • MGC6956, MGC6983

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024085.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK048256
      Related
      ENSMUST00000124028.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      112554753..112602182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_146031.1: Suppressed sequence

      Description
      NM_146031.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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