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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001122730.3 → NP_001116202.2 trinucleotide repeat-containing gene 18 protein isoform A
Status: VALIDATED
- Description
- Transcript Variant: This variant (A) represents the longer transcript and encodes the longer isoform (A).
- Source sequence(s)
-
AC144818, AC240265, AK141849, AW491486, BC049818, BC094365, BY713750, CB244319, CB249572
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Related
- ENSMUSP00000117651.3, ENSMUST00000152247.8
- Conserved Domains (4) summary
-
- PHA03247
Location:996 → 1305
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2169 → 2383
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2703 → 2847
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2108 → 2174
- Tudor_SF; Tudor domain superfamily
-
NM_178242.3 → NP_839973.1 trinucleotide repeat-containing gene 18 protein isoform B
See identical proteins and their annotated locations for NP_839973.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (B) contains an alternate in-frame exon and differs in the 3' UTR and coding sequence compared to variant A. The resulting isoform (B) contains an alternate internal segment and has a shorter and distinct C-terminus compared to isoform A.
- Source sequence(s)
-
AC144818, BC049818, BY713750, CB520310
- Consensus CDS
-
CCDS19830.1
- UniProtKB/TrEMBL
-
D3YV17
- Related
- ENSMUSP00000114769.3, ENSMUST00000151477.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
142710357..142812386 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030254452.2 → XP_030110312.1 trinucleotide repeat-containing gene 18 protein isoform X4
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:997 → 1306
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2213 → 2427
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2747 → 2891
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2152 → 2218
- Tudor_SF; Tudor domain superfamily
-
XM_011240976.4 → XP_011239278.1 trinucleotide repeat-containing gene 18 protein isoform X1
See identical proteins and their annotated locations for XP_011239278.1
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:1049 → 1358
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2265 → 2479
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2799 → 2943
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2212 → 2264
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_036165101.1 → XP_036020994.1 trinucleotide repeat-containing gene 18 protein isoform X4
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:997 → 1306
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2213 → 2427
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2747 → 2891
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2152 → 2218
- Tudor_SF; Tudor domain superfamily
-
XM_011240977.4 → XP_011239279.1 trinucleotide repeat-containing gene 18 protein isoform X1
See identical proteins and their annotated locations for XP_011239279.1
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:1049 → 1358
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2265 → 2479
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2799 → 2943
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2212 → 2264
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_030254454.2 → XP_030110314.1 trinucleotide repeat-containing gene 18 protein isoform X5
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:996 → 1305
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2212 → 2426
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2746 → 2890
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2159 → 2211
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_006504690.5 → XP_006504753.1 trinucleotide repeat-containing gene 18 protein isoform X4
See identical proteins and their annotated locations for XP_006504753.1
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:997 → 1306
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2213 → 2427
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2747 → 2891
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2152 → 2218
- Tudor_SF; Tudor domain superfamily
-
XM_006504688.4 → XP_006504751.1 trinucleotide repeat-containing gene 18 protein isoform X2
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:1048 → 1357
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2264 → 2478
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2798 → 2942
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2211 → 2263
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_006504689.4 → XP_006504752.1 trinucleotide repeat-containing gene 18 protein isoform X3
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:1049 → 1358
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2222 → 2436
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2756 → 2900
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2169 → 2221
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_006504687.4 → XP_006504750.1 trinucleotide repeat-containing gene 18 protein isoform X1
See identical proteins and their annotated locations for XP_006504750.1
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:1049 → 1358
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2265 → 2479
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2799 → 2943
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2212 → 2264
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_030254453.2 → XP_030110313.1 trinucleotide repeat-containing gene 18 protein isoform X4
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:997 → 1306
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2213 → 2427
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2747 → 2891
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2152 → 2218
- Tudor_SF; Tudor domain superfamily
-
XM_030254451.2 → XP_030110311.1 trinucleotide repeat-containing gene 18 protein isoform X4
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:997 → 1306
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2213 → 2427
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2747 → 2891
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl02573
Location:2152 → 2218
- Tudor_SF; Tudor domain superfamily
-
XM_006504691.5 → XP_006504754.1 trinucleotide repeat-containing gene 18 protein isoform X6
- UniProtKB/Swiss-Prot
- Q1LZJ7, Q69Z86, Q80WC3
- Conserved Domains (4) summary
-
- PHA03247
Location:975 → 1284
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:2191 → 2405
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2725 → 2869
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:2138 → 2190
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_030254457.2 → XP_030110317.1 trinucleotide repeat-containing gene 18 protein isoform X7
- UniProtKB/TrEMBL
-
F6Z7L1
- Conserved Domains (4) summary
-
- PHA03247
Location:545 → 854
- PHA03247; large tegument protein UL36; Provisional
- PRK12323
Location:1761 → 1975
- PRK12323; DNA polymerase III subunit gamma/tau
- cd04714
Location:2295 → 2439
- BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
- cl07283
Location:1708 → 1760
- Tudor_3; DNA repair protein Crb2 Tudor domain
-
XM_036165102.1 → XP_036020995.1 trinucleotide repeat-containing gene 18 protein isoform X8
- Conserved Domains (1) summary
-
- NF033930
Location:1035 → 1111
- pneumo_PspA; pneumococcal surface protein A