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    PCDH9 protocadherin 9 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102128886, updated on 3-Dec-2024

    Summary

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    Gene symbol
    PCDH9
    Gene description
    protocadherin 9
    See related
    Ensembl:ENSMFAG00000042951
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH9 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 17 NC_088391.1 (56905797..57862583, complement)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 17 NC_052271.1 (45821349..46783302, complement)

    Chromosome 17 - NC_088391.1Genomic Context describing neighboring genes Neighboring gene steroidogenic acute regulatory protein, mitochondrial-like Neighboring gene uncharacterized LOC107127991 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC135968117 Neighboring gene uncharacterized LOC135968120 Neighboring gene uncharacterized LOC135968119 Neighboring gene uncharacterized LOC135968118 Neighboring gene uncharacterized LOC123569877 Neighboring gene nucleophosmin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-9
    Names
    Protocadherin-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088391.1 Reference T2T-MFA8v1.0

      Range
      56905797..57862583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005585979.4 → XP_005586036.1  protocadherin-9 isoform X9

      UniProtKB/TrEMBL
      A0A7N9D6U0
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    2. XM_005585977.4 → XP_005586034.1  protocadherin-9 isoform X6

      See identical proteins and their annotated locations for XP_005586034.1

      UniProtKB/TrEMBL
      A0A2K5VCH6, A0A2K5VCN5
      Related
      ENSMFAP00000022461.1
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    3. XM_015439327.3 → XP_015294813.1  protocadherin-9 isoform X8

      UniProtKB/TrEMBL
      A0A2K5VCN5
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    4. XM_015439324.3 → XP_015294810.1  protocadherin-9 isoform X3

      UniProtKB/TrEMBL
      A0A2K5VCN5
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    5. XM_005585978.4 → XP_005586035.1  protocadherin-9 isoform X7

      UniProtKB/TrEMBL
      A0A7N9D6U0
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    6. XM_005585976.4 → XP_005586033.1  protocadherin-9 isoform X2

      See identical proteins and their annotated locations for XP_005586033.1

      UniProtKB/TrEMBL
      A0A2K5VCM2, A0A7N9D6U0, A0A8J8YG06, G7PVH6
      Related
      ENSMFAP00000022459.1
      Conserved Domains (3) summary
      cd11304
      Location:576 → 671
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08374
      Location:777 → 997
      Protocadherin; Protocadherin
      cl09101
      Location:28 → 117
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

    7. XM_065533312.1 → XP_065389384.1  protocadherin-9 isoform X4

      UniProtKB/TrEMBL
      A0A2K5VCN5, A0A7N9D6U0

    8. XM_045377237.2 → XP_045233172.1  protocadherin-9 isoform X5

      UniProtKB/TrEMBL
      A0A2K5VCN5, A0A7N9D6U0

    9. XM_045377235.2 → XP_045233170.1  protocadherin-9 isoform X1

      UniProtKB/TrEMBL
      A0A2K5VCN5, A0A7N9D6U0

    10. XM_065533313.1 → XP_065389385.1  protocadherin-9 isoform X10

      UniProtKB/TrEMBL
      A0A7N9D6U0
    Nucleotide Protein
    Heading Accession and Version

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