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    • Showing Current items.

    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856747, updated on 9-Dec-2024

    Summary

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    Primary source
    SGD:S000006593
    Locus tag
    YNCE0013W
    See related
    AllianceGenome:SGD:S000006593
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables ribosome binding activity and translation repressor activity. Involved in regulation of translation in response to stress. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: V
    Sequence:
    Chromosome: V; NC_001137.3 (207357..207428)

    Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene carnitine O-acetyltransferase YAT2 Neighboring gene translation initiation factor eIF2 subunit gamma Neighboring gene CDP-diacylglycerol-serine O-phosphatidyltransferase Neighboring gene Gal83p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001137.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Saccharomyces cerevisiae Thg1 uses 5'-pyrophosphate removal to control addition of nucleotides to tRNA(His.). Smith BA, et al. Biochemistry, 2014 Mar 4. PMID 24548272, Free PMC Article
    2. tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae. Preston MA, et al. RNA, 2013 Feb. PMID 23249748, Free PMC Article
    3. The requirement for the highly conserved G-1 residue of Saccharomyces cerevisiae tRNAHis can be circumvented by overexpression of tRNAHis and its synthetase. Preston MA, et al. RNA, 2010 May. PMID 20360392, Free PMC Article
    4. tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro. Bąkowska-Żywicka K, et al. FEMS Yeast Res, 2016 Sep. PMID 27609601, Free PMC Article
    5. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • Histidine tRNA (tRNA-His), predicted by tRNAscan-SE analysis

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables ribosome binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables translation repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of translation in response to stress IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

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