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    WWOX WW domain containing oxidoreductase [ Homo sapiens (human) ]

    Gene ID: 51741, updated on 10-Dec-2024

    Summary

    Official Symbol
    WWOXprovided by HGNC
    Official Full Name
    WW domain containing oxidoreductaseprovided by HGNC
    Primary source
    HGNC:HGNC:12799
    See related
    Ensembl:ENSG00000186153 MIM:605131; AllianceGenome:HGNC:12799
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FOR; WOX1; DEE28; EIEE28; FRA16D; SCAR12; HHCMA56; PRO0128; SDR41C1; D16S432E
    Summary
    This gene encodes a member of the short-chain dehydrogenases/reductases (SDR) protein family. This gene spans the FRA16D common chromosomal fragile site and appears to function as a tumor suppressor gene. Expression of the encoded protein is able to induce apoptosis, while defects in this gene are associated with multiple types of cancer. Disruption of this gene is also associated with autosomal recessive spinocerebellar ataxia 12. Disruption of a similar gene in mouse results in impaired steroidogenesis, additionally suggesting a metabolic function for the protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014]
    Expression
    Ubiquitous expression in thyroid (RPKM 4.4), kidney (RPKM 2.1) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See WWOX in Genome Data Viewer
    Location:
    16q23.1-q23.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (78099654..79212667)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (84155399..85268915)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (78133551..79246564)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984897 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45663 Neighboring gene leucine rich repeat containing 59 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45737 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45804 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45838 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:78133785-78134284 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45974 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45980 Neighboring gene keratin 8 pseudogene 22 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46047 Neighboring gene Sharpr-MPRA regulatory region 1447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:78247857-78248356 Neighboring gene Sharpr-MPRA regulatory region 10407 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:78337176-78337676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:78337677-78338177 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:78345064-78345644 Neighboring gene NANOG hESC enhancer GRCh37_chr16:78347375-78347876 Neighboring gene WWOX antisense RNA 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46172 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46191 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46196 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:78405950-78406582 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:78455072-78455805 Neighboring gene Sharpr-MPRA regulatory region 4302 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46257 Neighboring gene uncharacterized LOC124903728 Neighboring gene uncharacterized LOC124903730 Neighboring gene VISTA enhancer hs12 Neighboring gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 5 Neighboring gene uncharacterized LOC105371354 Neighboring gene NANOG hESC enhancer GRCh37_chr16:78645793-78646336 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11156 Neighboring gene uncharacterized LOC112268165 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11157 Neighboring gene ribosomal protein S3 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:79001468-79001968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:79001969-79002469 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:79009787-79010986 Neighboring gene Sharpr-MPRA regulatory region 10194 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:79087270-79087965 Neighboring gene NANOG hESC enhancer GRCh37_chr16:79111232-79111752 Neighboring gene uncharacterized LOC107984806 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:79203711-79204283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:79321285-79321785 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:79332665-79333313 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:79333314-79333961 Neighboring gene RNA, 5S ribosomal pseudogene 431 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:79362104-79362979 Neighboring gene MPRA-validated peak2651 silencer Neighboring gene MAF bZIP transcription factor Neighboring gene ReSE screen-validated silencer GRCh37_chr16:79516400-79516610 Neighboring gene uncharacterized LOC124903729

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    BioGRID CRISPR Screen Phenotypes (14 hits/1271 screens)

    Associated conditions

    Description Tests
    Autosomal recessive spinocerebellar ataxia 12
    MedGen: C3280452 OMIM: 614322 GeneReviews: Not available
    Compare labs
    Developmental and epileptic encephalopathy, 28
    MedGen: C4015519 OMIM: 616211 GeneReviews: Not available
    Compare labs
    Malignant tumor of esophagus
    MedGen: C0546837 OMIM: 133239 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Items 1 - 10 of 14
    Description
    A genome-wide association study on obesity and obesity-related traits.
    EBI GWAS Catalog
    Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.
    EBI GWAS Catalog
    Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
    EBI GWAS Catalog
    Genetic variants associated with disordered eating.
    EBI GWAS Catalog
    Genetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network.
    EBI GWAS Catalog
    Genome-wide association analysis identifies six new loci associated with forced vital capacity.
    EBI GWAS Catalog
    Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.
    EBI GWAS Catalog
    Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.
    EBI GWAS Catalog
    Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
    EBI GWAS Catalog
    Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
    EBI GWAS Catalog
    Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
    EBI GWAS Catalog
    Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.
    EBI GWAS Catalog
    Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.
    EBI GWAS Catalog
    Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.
    EBI GWAS Catalog
    Items 1 - 10 of 14

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables enzyme binding PubMed 
    enables identical protein binding PubMed 
    enables oxidoreductase activity PubMed 
    enables protein binding PubMed 
    contributes_to transcription coactivator activity PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus PubMed 
    part_of RNA polymerase II transcription regulator complex PubMed 
    located_in cytoplasm PubMed 
    located_in cytosol PubMed 
    located_in cytosol  
    located_in lysosome  
    colocalizes_with microvillus PubMed 
    located_in mitochondrion  
    located_in nucleus PubMed 
    colocalizes_with plasma membrane PubMed 

    General protein information

    Preferred Names
    WW domain-containing oxidoreductase
    Names
    WW domain-containing protein WWOX
    fragile site FRA16D oxidoreductase
    short chain dehydrogenase/reductase family 41C member 1
    NP_001278926.1
    NP_057457.1
    NP_570607.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011698.1 RefSeqGene

      Range
      5001..1118014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001291997.2 → NP_001278926.1  WW domain-containing oxidoreductase isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in its 5' UTR and uses a downstream start codon, compared to variant 1. The encoded isoform (4) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AF211943
      UniProtKB/TrEMBL
      B4DPG3
      Conserved Domains (2) summary
      cd09809
      Location:11 → 294
      human_WWOX_like_SDR_c-like; human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs
      PRK06196
      Location:2 → 291
      PRK06196; oxidoreductase; Provisional
    2. NM_016373.4 → NP_057457.1  WW domain-containing oxidoreductase isoform 1

      See identical proteins and their annotated locations for NP_057457.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AF211943
      Consensus CDS
      CCDS42196.1
      UniProtKB/Swiss-Prot
      A8K323, Q5MYT5, Q96KM3, Q96RF2, Q9BTT8, Q9NPC9, Q9NRF4, Q9NRF5, Q9NRF6, Q9NRK1, Q9NZC5, Q9NZC7
      UniProtKB/TrEMBL
      A0A411HBC7, A8K5I5, B3KNJ9
      Related
      ENSP00000457230.1, ENST00000566780.6
      Conserved Domains (2) summary
      cd09809
      Location:124 → 407
      human_WWOX_like_SDR_c-like; human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs
      cd00201
      Location:19 → 47
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    3. NM_130791.5 → NP_570607.1  WW domain-containing oxidoreductase isoform 2

      See identical proteins and their annotated locations for NP_570607.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks several exons and uses an alternate 3'-terminal exon, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AF187015, DB035405
      Consensus CDS
      CCDS42197.1
      UniProtKB/TrEMBL
      A0A411HBF5
      Related
      ENSP00000348119.3, ENST00000355860.7
      Conserved Domains (3) summary
      cd00201
      Location:60 → 90
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam00397
      Location:18 → 47
      WW; WW domain
      cl21454
      Location:124 → 172
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RNA

    1. NR_120435.2 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) is intronless and extends past a splice site that is used in variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AF227529, AW874693, DB035405
      Related
      ENST00000569818.1
    2. NR_120436.3 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) uses an alternate splice site in the 5'-terminal exon, lacks several exons, and uses an alternate 3'-terminal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AF187015, BU157392, DB035405
      Related
      ENST00000563358.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      78099654..79212667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      84155399..85268915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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