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    LOC4343906 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343906, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343906
    Gene description
    3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic
    Locus tag
    OSNPB_070616200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343906 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25618099..25623702, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25392932..25398616, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene probable GPI-anchored adhesin-like protein PGA55 Neighboring gene uncharacterized LOC112939603 Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic
    Names
    B1056G08.109
    Os07g0616200
    putative 3-oxoacyl-[acyl-carrier-protein] synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25618099..25623702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789191.3 → XP_015644677.1  3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic

      UniProtKB/TrEMBL
      A2YNP7, Q0D4N5, Q8H3I6
      Conserved Domains (1) summary
      PLN02787
      Location:1 → 507
      PLN02787; 3-oxoacyl-[acyl-carrier-protein] synthase II
    Nucleotide Protein
    Heading Accession and Version

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