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    OFD1 OFD1, centriole and centriolar satellite protein [ Gallus gallus (chicken) ]

    Gene ID: 418633, updated on 17-Aug-2024

    Summary

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    Symbol
    OFD1provided by CGNC
    Full Name
    OFD1, centriole and centriolar satellite proteinprovided by CGNC
    Primary source
    CGNC:12417
    See related
    Ensembl:ENSGALG00010002408
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OFD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (123059529..123088803, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (123022735..123052009, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 8 Neighboring gene glycoprotein M6B Neighboring gene trafficking protein particle complex 2 Neighboring gene RAB9A, member RAS oncogene family Neighboring gene maestro heat-like repeat-containing protein family member 2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oral-facial-digital syndrome 1 protein
    Names
    oral-facial-digital syndrome 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      123059529..123088803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_416831.8 → XP_416831.3  oral-facial-digital syndrome 1 protein isoform X1

      UniProtKB/TrEMBL
      V9GVH4
      Related
      ENSGALP00010003369.1, ENSGALT00010005530.1
      Conserved Domains (2) summary
      smart00667
      Location:70 → 97
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:229 → 550
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_004934713.5 → XP_004934770.2  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Related
      ENSGALP00010003371.1, ENSGALT00010005532.1
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_040662130.2 → XP_040518064.1  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_004934712.5 → XP_004934769.2  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      123022735..123052009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040662230.2 → XP_040518164.1  oral-facial-digital syndrome 1 protein isoform X1

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:70 → 97
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:229 → 550
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_040662232.2 → XP_040518166.1  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_040662233.2 → XP_040518167.1  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_040662231.2 → XP_040518165.1  oral-facial-digital syndrome 1 protein isoform X2

      UniProtKB/TrEMBL
      V9GVH4
      Conserved Domains (2) summary
      smart00667
      Location:27 → 54
      LisH; Lissencephaly type-1-like homology motif
      COG1196
      Location:186 → 507
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein Strain
    Heading Accession and Version

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