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    LIMS1 LIM zinc finger domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 414880, updated on 3-Dec-2024

    Summary

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    Symbol
    LIMS1provided by CGNC
    Full Name
    LIM zinc finger domain containing 1provided by CGNC
    Primary source
    CGNC:49937
    See related
    Ensembl:ENSGALG00010015374
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PINCH1
    Orthologs
    human mouse all
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    Genomic context

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    See LIMS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (136330053..136394041)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (136288385..136352341)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 3 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene E3 SUMO-protein ligase RanBP2-like Neighboring gene uncharacterized LOC107051983 Neighboring gene coiled-coil domain containing 138

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PINCH-1 expression during early avian embryogenesis: implications for neural crest and heart development. Martinsen BJ, et al. Dev Dyn, 2006 Jan. PMID 16258920
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM and senescent cell antigen-like-containing domain protein 1
    Names
    LIM and senescent cell antigen-like domains 1
    particularly interesting new Cys-His protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001766.2 → NP_001001766.2  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    2. NM_001397901.1 → NP_001384830.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      A0A8V0YS09, A0A8V0YS32
      Related
      ENSGALP00010021495.1, ENSGALT00010036930.1
      Conserved Domains (5) summary
      cd09331
      Location:72 → 130
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:133 → 184
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:197 → 247
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:253 → 306
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:314 → 367
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    3. NM_001397902.1 → NP_001384831.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      A0A1D5P599, Q6IYF7
      Related
      ENSGALP00010021502.1, ENSGALT00010036946.1
      Conserved Domains (5) summary
      cd09331
      Location:47 → 105
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:108 → 159
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:172 → 222
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:228 → 281
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:289 → 342
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    4. NM_001397903.1 → NP_001384832.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:23 → 81
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:84 → 135
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:148 → 198
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:204 → 257
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:265 → 318
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    5. NM_001397904.1 → NP_001384833.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q5ZL81, Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:23 → 81
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:84 → 135
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:148 → 198
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:204 → 257
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:265 → 318
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    6. NM_001397905.1 → NP_001384834.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7
      Related
      ENSGALP00010021521.1, ENSGALT00010036987.1
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    7. NM_001397906.1 → NP_001384835.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    8. NM_001397907.1 → NP_001384836.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    9. NM_001397908.1 → NP_001384837.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    10. NM_001397909.1 → NP_001384838.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    11. NM_001397910.1 → NP_001384839.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      Q6IYF7
      Related
      ENSGALP00010021499.1, ENSGALT00010036942.1
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      136330053..136394041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927164.1 → XP_046783120.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

      UniProtKB/TrEMBL
      Q6IYF7

    2. XM_046927157.1 → XP_046783113.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7

    3. XM_046927094.1 → XP_046783050.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7

    4. XM_040676063.2 → XP_040531997.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    5. XM_046926957.1 → XP_046782913.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YS32, A0A8V0YS89
      Related
      ENSGALP00010021497.1, ENSGALT00010036936.1

    6. XM_040675976.2 → XP_040531910.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:10 → 68
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71 → 122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135 → 185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191 → 244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252 → 305
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    7. XM_040675469.2 → XP_040531403.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

      UniProtKB/TrEMBL
      Q6IYF7
      Conserved Domains (5) summary
      cd09331
      Location:47 → 105
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:108 → 159
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:172 → 222
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:228 → 281
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:289 → 342
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    RNA

    1. XR_003073550.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      136288385..136352341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046906994.1 → XP_046762950.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7

    2. XM_046906996.1 → XP_046762952.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7

    3. XM_046906992.1 → XP_046762948.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YS32, A0A8V0YS89

    4. XM_046906995.1 → XP_046762951.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YTT9, Q6IYF7

    5. XM_046906993.1 → XP_046762949.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YKQ4

    RNA

    1. XR_006932650.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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