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    NUP54 nucleoporin 54 [ Gallus gallus (chicken) ]

    Gene ID: 422639, updated on 3-Dec-2024

    Summary

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    Symbol
    NUP54provided by CGNC
    Full Name
    nucleoporin 54provided by CGNC
    Primary source
    CGNC:8743
    See related
    Ensembl:ENSGALG00010004135
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See NUP54 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (49444402..49456604)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (49448534..49460737)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene protein FAM47E Neighboring gene scavenger receptor class B member 2 Neighboring gene protein phosphatase with EF-hand domain 2 Neighboring gene uncharacterized LOC112532331 Neighboring gene N-acylethanolamine acid amidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear pore organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to nuclear inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore central transport channel IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin p54
    Names
    nucleoporin 54kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49444402..49456604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015276423.4 → XP_015131909.1  nucleoporin p54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XG34, F1NZ34
      Related
      ENSGALP00010005670.1, ENSGALT00010009656.1
      Conserved Domains (2) summary
      pfam13874
      Location:350 → 487
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:503 → 541
      Nup54_C; Nup54 C-terminal interacting domain

    2. XM_015276424.4 → XP_015131910.1  nucleoporin p54 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RVY5, A0A8V0XG34
      Related
      ENSGALP00010005668.1, ENSGALT00010009653.1
      Conserved Domains (2) summary
      pfam13874
      Location:296 → 433
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:449 → 487
      Nup54_C; Nup54 C-terminal interacting domain

    3. XM_046940809.1 → XP_046796765.1  nucleoporin p54 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XG34, A0A8V0XN71
      Related
      ENSGALP00010005666.1, ENSGALT00010009648.1

    RNA

    1. XR_003074921.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49448534..49460737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670843.2 → XP_040526777.1  nucleoporin p54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XG34, F1NZ34
      Conserved Domains (2) summary
      pfam13874
      Location:350 → 487
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:503 → 541
      Nup54_C; Nup54 C-terminal interacting domain

    2. XM_040670844.2 → XP_040526778.1  nucleoporin p54 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RVY5, A0A8V0XG34
      Conserved Domains (2) summary
      pfam13874
      Location:296 → 433
      Nup54; Nucleoporin complex subunit 54
      pfam18437
      Location:449 → 487
      Nup54_C; Nup54 C-terminal interacting domain

    3. XM_046917046.1 → XP_046773002.1  nucleoporin p54 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XG34, A0A8V0XN71

    RNA

    1. XR_005849634.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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