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    VPS41 VPS41 subunit of HOPS complex [ Gallus gallus (chicken) ]

    Gene ID: 420762, updated on 3-Dec-2024

    Summary

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    Official Symbol
    VPS41provided by CGNC
    Official Full Name
    VPS41 subunit of HOPS complexprovided by CGNC
    Primary source
    CGNC:9346
    See related
    Ensembl:ENSGALG00010016583
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VPS41 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (49275989..49384583, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (49323801..49433066, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene T-cell receptor gamma chain V region PT-gamma-1/2-like Neighboring gene amphiphysin Neighboring gene uncharacterized LOC121109699 Neighboring gene uncharacterized LOC121109700 Neighboring gene POU class 6 homeobox 2 Neighboring gene uncharacterized LOC124417761

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 41 homolog
    Names
    VPS41, HOPS complex subunit
    vacuolar protein sorting 41 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012859.1 → NP_001012877.1  vacuolar protein sorting-associated protein 41 homolog

      See identical proteins and their annotated locations for NP_001012877.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ719864
      UniProtKB/TrEMBL
      A0A8V0Z3N9, Q5ZL70
      Related
      ENSGALP00010023199.1, ENSGALT00010040044.1
      Conserved Domains (3) summary
      smart00299
      Location:521 → 658
      CLH; Clathrin heavy chain repeat homology
      pfam00637
      Location:525 → 660
      Clathrin; Region in Clathrin and VPS
      sd00039
      Location:88 → 119
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49275989..49384583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281554.4 → XP_015137040.1  vacuolar protein sorting-associated protein 41 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5PZF2, A0A8V0Z3N9
      Related
      ENSGALP00010023211.1, ENSGALT00010040059.1
      Conserved Domains (3) summary
      smart00299
      Location:571 → 708
      CLH; Clathrin heavy chain repeat homology
      pfam00637
      Location:575 → 710
      Clathrin; Region in Clathrin and VPS
      sd00039
      Location:138 → 169
      7WD40; WD40 repeat [structural motif]

    2. XM_046923880.1 → XP_046779836.1  vacuolar protein sorting-associated protein 41 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z3N9, Q5ZL70

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49323801..49433066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046911340.1 → XP_046767296.1  vacuolar protein sorting-associated protein 41 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5PZF2, A0A8V0Z3N9

    2. XM_046911341.1 → XP_046767297.1  vacuolar protein sorting-associated protein 41 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z3N9, Q5ZL70
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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