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    FUBP3 far upstream element binding protein 3 [ Gallus gallus (chicken) ]

    Gene ID: 417184, updated on 3-Dec-2024

    Summary

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    Symbol
    FUBP3provided by CGNC
    Full Name
    far upstream element binding protein 3provided by CGNC
    Primary source
    CGNC:2892
    See related
    Ensembl:ENSGALG00010028889
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See FUBP3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (6517311..6554406)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (5928265..5965502)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417282 Neighboring gene neuronal calcium sensor 1 Neighboring gene argininosuccinate synthase 1 Neighboring gene microRNA 1753-1 Neighboring gene PR/SET domain 12 Neighboring gene uncharacterized LOC121107103 Neighboring gene exosome component 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    far upstream element-binding protein 3
    Names
    far upstream element (FUSE) binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006199.2 → NP_001006199.1  far upstream element-binding protein 3

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1AHY8, F1NGC0, Q5ZM76
      Related
      ENSGALP00010043005.1, ENSGALT00010069879.1
      Conserved Domains (4) summary
      cd22480
      Location:96 → 166
      KH-I_FUBP3_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22483
      Location:177 → 259
      KH-I_FUBP3_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22486
      Location:270 → 339
      KH-I_FUBP3_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22489
      Location:374 → 442
      KH-I_FUBP3_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6517311..6554406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279453.4 → XP_015134939.1  far upstream element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TU83, A0A8V1AHZ3
      Related
      ENSGALP00010043000.1, ENSGALT00010069874.1
      Conserved Domains (2) summary
      smart00322
      Location:179 → 250
      KH; K homology RNA-binding domain
      cd00105
      Location:97 → 159
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    2. XM_015279457.4 → XP_015134943.1  far upstream element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q3AB26, A0A8V1AHZ3
      Related
      ENSGALP00010043001.1, ENSGALT00010069875.1
      Conserved Domains (4) summary
      cd22480
      Location:96 → 166
      KH-I_FUBP3_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22483
      Location:177 → 259
      KH-I_FUBP3_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22486
      Location:270 → 339
      KH-I_FUBP3_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22489
      Location:374 → 442
      KH-I_FUBP3_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins

    3. XM_015279454.4 → XP_015134940.1  far upstream element-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (2) summary
      smart00322
      Location:178 → 249
      KH; K homology RNA-binding domain
      cd00105
      Location:96 → 158
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    4. XM_040649064.2 → XP_040504998.1  far upstream element-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (1) summary
      smart00322
      Location:178 → 249
      KH; K homology RNA-binding domain

    5. XM_040649063.2 → XP_040504997.1  far upstream element-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (4) summary
      cd22480
      Location:95 → 165
      KH-I_FUBP3_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22483
      Location:176 → 258
      KH-I_FUBP3_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22486
      Location:269 → 338
      KH-I_FUBP3_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22489
      Location:373 → 441
      KH-I_FUBP3_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins

    6. XM_040649066.2 → XP_040505000.1  far upstream element-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A8V1AHY8
      Conserved Domains (1) summary
      smart00322
      Location:178 → 249
      KH; K homology RNA-binding domain

    7. XM_015279455.4 → XP_015134941.1  far upstream element-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Related
      ENSGALP00010043003.1, ENSGALT00010069877.1
      Conserved Domains (2) summary
      smart00322
      Location:162 → 233
      KH; K homology RNA-binding domain
      cd00105
      Location:80 → 142
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    8. XM_015279459.4 → XP_015134945.1  far upstream element-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (4) summary
      cd22480
      Location:79 → 149
      KH-I_FUBP3_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22483
      Location:160 → 242
      KH-I_FUBP3_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22486
      Location:253 → 322
      KH-I_FUBP3_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22489
      Location:357 → 425
      KH-I_FUBP3_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins

    9. XM_015279461.4 → XP_015134947.1  far upstream element-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A8V1AK70
      Conserved Domains (2) summary
      smart00322
      Location:162 → 233
      KH; K homology RNA-binding domain
      cd00105
      Location:80 → 142
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    10. XM_015279456.4 → XP_015134942.1  far upstream element-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (2) summary
      smart00322
      Location:161 → 232
      KH; K homology RNA-binding domain
      cd00105
      Location:79 → 141
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    11. XM_040649065.2 → XP_040504999.1  far upstream element-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (1) summary
      smart00322
      Location:161 → 232
      KH; K homology RNA-binding domain

    12. XM_040649067.2 → XP_040505001.1  far upstream element-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      A0A8V1AFX5, A0A8V1AK70
      Related
      ENSGALP00010043006.1, ENSGALT00010069880.1
      Conserved Domains (1) summary
      smart00322
      Location:161 → 232
      KH; K homology RNA-binding domain

    13. XM_015279460.3 → XP_015134946.1  far upstream element-binding protein 3 isoform X13

      Conserved Domains (2) summary
      smart00322
      Location:37 → 108
      KH; K homology RNA-binding domain
      cd00105
      Location:232 → 297
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5928265..5965502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928934.1 → XP_046784890.1  far upstream element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TU83, A0A8V1AHZ3

    2. XM_046928938.1 → XP_046784894.1  far upstream element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q3AB26, A0A8V1AHZ3

    3. XM_046928935.1 → XP_046784891.1  far upstream element-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AHZ3

    4. XM_046928939.1 → XP_046784895.1  far upstream element-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A8V1AHZ3
      Conserved Domains (4) summary
      cd22480
      Location:95 → 165
      KH-I_FUBP3_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22483
      Location:176 → 258
      KH-I_FUBP3_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22486
      Location:269 → 338
      KH-I_FUBP3_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins
      cd22489
      Location:373 → 441
      KH-I_FUBP3_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 3 (FUBP3) and similar proteins

    5. XM_046928942.1 → XP_046784898.1  far upstream element-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A8V1AHY8

    6. XM_046928936.1 → XP_046784892.1  far upstream element-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AHZ3

    7. XM_046928940.1 → XP_046784896.1  far upstream element-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A8V1AHZ3

    8. XM_046928943.1 → XP_046784899.1  far upstream element-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A8V1AK70

    9. XM_046928937.1 → XP_046784893.1  far upstream element-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AHZ3

    10. XM_046928941.1 → XP_046784897.1  far upstream element-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A8V1AHZ3

    11. XM_046928944.1 → XP_046784900.1  far upstream element-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      A0A8V1AFX5, A0A8V1AK70

    12. XM_046928945.1 → XP_046784901.1  far upstream element-binding protein 3 isoform X13

    Nucleotide Protein Strain
    Heading Accession and Version

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