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    CHADL chondroadherin-like [ Gallus gallus (chicken) ]

    Gene ID: 417998, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHADLprovided by CGNC
    Official Full Name
    chondroadherin-likeprovided by CGNC
    Primary source
    CGNC:50649
    See related
    Ensembl:ENSGALG00010012832
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CHADL in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (49792638..49796947)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (50090089..50094400)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene Ran GTPase activating protein 1 Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene E1A binding protein p300 Neighboring gene uncharacterized LOC107053731

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroadherin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252276.3 → NP_001239205.2  chondroadherin-like protein precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A8V0YG24
      Conserved Domains (6) summary
      smart00013
      Location:21 → 54
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:650 → 696
      LRRCT; Leucine rich repeat C-terminal domain
      PLN00113
      Location:49 → 298
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      COG4886
      Location:383 → 652
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:642 → 653
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:401 → 424
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49792638..49796947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025148538.3 → XP_025004306.2  chondroadherin-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0YG24
      Related
      ENSGALP00010017847.1, ENSGALT00010030772.1
      Conserved Domains (6) summary
      smart00013
      Location:21 → 54
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:650 → 696
      LRRCT; Leucine rich repeat C-terminal domain
      PLN00113
      Location:49 → 298
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      COG4886
      Location:383 → 652
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:642 → 653
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:401 → 424
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015285150.4 → XP_015140636.2  chondroadherin-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0YG24
      Conserved Domains (6) summary
      smart00013
      Location:21 → 54
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:650 → 696
      LRRCT; Leucine rich repeat C-terminal domain
      PLN00113
      Location:49 → 298
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      COG4886
      Location:383 → 652
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:642 → 653
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:401 → 424
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      50090089..50094400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907452.1 → XP_046763408.1  chondroadherin-like protein isoform X1

    2. XM_046907453.1 → XP_046763409.1  chondroadherin-like protein isoform X1

    Nucleotide Protein
    Heading Accession and Version

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