U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TRIM35 tripartite motif containing 35 [ Gallus gallus (chicken) ]

    Gene ID: 771180, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRIM35provided by CGNC
    Official Full Name
    tripartite motif containing 35provided by CGNC
    Primary source
    CGNC:12434
    See related
    Ensembl:ENSGALG00010010473
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRIM35 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (105152374..105157161)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (104916092..104920878)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene otoferlin Neighboring gene dynein regulatory complex subunit 1 Neighboring gene angiopoietin-related protein 7-like Neighboring gene stathmin 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tripartite motif-containing protein 35; E3 ubiquitin-protein ligase TRIM35

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      105152374..105157161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004935864.5 → XP_004935921.1  E3 ubiquitin-protein ligase TRIM35 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y9E9, A0A8V0YE40
      Related
      ENSGALP00010014227.1, ENSGALT00010025029.1
      Conserved Domains (4) summary
      smart00502
      Location:193 → 296
      BBC; B-Box C-terminal domain
      cd12893
      Location:351 → 526
      SPRY_PRY_TRIM35; PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35)
      cd16599
      Location:58 → 101
      RING-HC_TRIM35_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 35 (TRIM35) and similar proteins
      cl00034
      Location:133 → 174
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_001234475.7 → XP_001234476.2  E3 ubiquitin-protein ligase TRIM35 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YE40
      Related
      ENSGALP00010014230.1, ENSGALT00010025034.1
      Conserved Domains (4) summary
      smart00502
      Location:180 → 284
      BBC; B-Box C-terminal domain
      cd12893
      Location:339 → 514
      SPRY_PRY_TRIM35; PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35)
      cd16599
      Location:58 → 101
      RING-HC_TRIM35_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 35 (TRIM35) and similar proteins
      cl00034
      Location:133 → 174
      Bbox_SF; B-box-type zinc finger superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      104916092..104920878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040668393.2 → XP_040524327.1  E3 ubiquitin-protein ligase TRIM35 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y9E9, A0A8V0YE40
      Conserved Domains (4) summary
      smart00502
      Location:193 → 296
      BBC; B-Box C-terminal domain
      cd12893
      Location:351 → 526
      SPRY_PRY_TRIM35; PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35)
      cd16599
      Location:58 → 101
      RING-HC_TRIM35_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 35 (TRIM35) and similar proteins
      cl00034
      Location:133 → 174
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_040668394.2 → XP_040524328.1  E3 ubiquitin-protein ligase TRIM35 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YE40
      Conserved Domains (4) summary
      smart00502
      Location:180 → 284
      BBC; B-Box C-terminal domain
      cd12893
      Location:339 → 514
      SPRY_PRY_TRIM35; PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35)
      cd16599
      Location:58 → 101
      RING-HC_TRIM35_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 35 (TRIM35) and similar proteins
      cl00034
      Location:133 → 174
      Bbox_SF; B-box-type zinc finger superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials