U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RBBP6 RB binding protein 6, ubiquitin ligase [ Gallus gallus (chicken) ]

    Gene ID: 416569, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    RBBP6provided by CGNC
    Full Name
    RB binding protein 6, ubiquitin ligaseprovided by CGNC
    Primary source
    CGNC:4529
    See related
    Ensembl:ENSGALG00010017644
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RBBP6 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (6781682..6813437)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (6777671..6809418)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 3 Neighboring gene uncharacterized LOC107054619 Neighboring gene trinucleotide repeat containing 6A Neighboring gene mucin-5AC-like Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RBBP6
    Names
    retinoblastoma binding protein 6
    XP_025010903.2
    XP_025010904.2
    XP_025010905.2
    XP_025010906.2
    XP_025010907.2
    XP_025010908.2
    XP_025010910.2
    XP_040539249.1
    XP_040539250.1
    XP_040539251.1
    XP_040539252.1
    XP_040539253.1
    XP_040539254.1
    XP_040539255.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6781682..6813437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025155135.3 → XP_025010903.2  E3 ubiquitin-protein ligase RBBP6 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YVP3, A0A8V0Z230
      Related
      ENSGALP00010025145.1, ENSGALT00010042655.1
      Conserved Domains (2) summary
      PTZ00121
      Location:953 → 1561
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    2. XM_025155139.3 → XP_025010907.2  E3 ubiquitin-protein ligase RBBP6 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z235
      Conserved Domains (2) summary
      PTZ00121
      Location:919 → 1527
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    3. XM_025155140.3 → XP_025010908.2  E3 ubiquitin-protein ligase RBBP6 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Z2J3
      Related
      ENSGALP00010025139.1, ENSGALT00010042649.1
      Conserved Domains (2) summary
      PTZ00121
      Location:797 → 1405
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    4. XM_025155136.3 → XP_025010904.2  E3 ubiquitin-protein ligase RBBP6 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:947 → 1555
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    5. XM_025155137.3 → XP_025010905.2  E3 ubiquitin-protein ligase RBBP6 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YVN4, A0A8V0Z230
      Related
      ENSGALP00010025134.1, ENSGALT00010042644.1
      Conserved Domains (2) summary
      PTZ00121
      Location:940 → 1548
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    6. XM_025155138.3 → XP_025010906.2  E3 ubiquitin-protein ligase RBBP6 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:934 → 1542
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    7. XM_025155142.3 → XP_025010910.2  E3 ubiquitin-protein ligase RBBP6 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Z235
      Related
      ENSGALP00010025137.1, ENSGALT00010042647.1
      Conserved Domains (2) summary
      PTZ00121
      Location:900 → 1508
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6777671..6809418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040683315.2 → XP_040539249.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:953 → 1561
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    2. XM_040683319.2 → XP_040539253.1  E3 ubiquitin-protein ligase RBBP6 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z235
      Conserved Domains (2) summary
      PTZ00121
      Location:919 → 1527
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    3. XM_040683320.2 → XP_040539254.1  E3 ubiquitin-protein ligase RBBP6 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Z2J3
      Conserved Domains (2) summary
      PTZ00121
      Location:797 → 1405
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    4. XM_040683316.2 → XP_040539250.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:947 → 1555
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 335
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    5. XM_040683317.2 → XP_040539251.1  E3 ubiquitin-protein ligase RBBP6 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:940 → 1548
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    6. XM_040683318.2 → XP_040539252.1  E3 ubiquitin-protein ligase RBBP6 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z230
      Conserved Domains (2) summary
      PTZ00121
      Location:934 → 1542
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    7. XM_040683321.2 → XP_040539255.1  E3 ubiquitin-protein ligase RBBP6 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Z235
      Conserved Domains (2) summary
      PTZ00121
      Location:900 → 1508
      PTZ00121; MAEBL; Provisional
      COG5222
      Location:2 → 322
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials