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    FAM172A family with sequence similarity 172 member A [ Gallus gallus (chicken) ]

    Gene ID: 427109, updated on 3-Dec-2024

    Summary

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    Official Symbol
    FAM172Aprovided by CGNC
    Official Full Name
    family with sequence similarity 172 member Aprovided by CGNC
    Primary source
    CGNC:10867
    See related
    Ensembl:ENSGALG00010013497
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ARB2A; C5orf21
    Orthologs
    human mouse all
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    Genomic context

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    See FAM172A in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (58908648..59172608)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (58908648..59172608)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene SMC5-SMC6 complex localization factor 1 Neighboring gene KIAA0825 Neighboring gene uncharacterized LOC121108265 Neighboring gene uncharacterized LOC124417495 Neighboring gene uncharacterized LOC112530550 Neighboring gene spidroin-1-like Neighboring gene nuclear receptor subfamily 2 group F member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables siRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cotranscriptional regulator ARB2A homolog; cotranscriptional regulator FAM172A homolog
    Names
    protein FAM172A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006574.2 → NP_001006574.1  cotranscriptional regulator ARB2A homolog precursor

      See identical proteins and their annotated locations for NP_001006574.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000095
      UniProtKB/Swiss-Prot
      Q5ZK44
      UniProtKB/TrEMBL
      A0A8V0YEI6
      Related
      ENSGALP00010019230.1, ENSGALT00010032486.1
      Conserved Domains (1) summary
      pfam09757
      Location:122 → 317
      Arb2; Arb2 domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      58908648..59172608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015280521.4 → XP_015136007.1  cotranscriptional regulator FAM172A homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0YEI6
      Conserved Domains (1) summary
      pfam09757
      Location:32 → 183
      Arb2; Arb2 domain

    2. XM_040655503.2 → XP_040511437.1  cotranscriptional regulator FAM172A homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZK44
      UniProtKB/TrEMBL
      A0A8V0YEI6
      Conserved Domains (1) summary
      pfam09757
      Location:122 → 317
      Arb2; Arb2 domain

    3. XM_046905316.1 → XP_046761272.1  cotranscriptional regulator FAM172A homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZK44
      UniProtKB/TrEMBL
      A0A8V0YEI6

    RNA

    1. XR_006932328.1 RNA Sequence

    2. XR_006932329.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      58908648..59172608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934996.1 → XP_046790952.1  cotranscriptional regulator FAM172A homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0YEI6

    2. XM_046934995.1 → XP_046790951.1  cotranscriptional regulator FAM172A homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZK44
      UniProtKB/TrEMBL
      A0A8V0YEI6

    3. XM_046934994.1 → XP_046790950.1  cotranscriptional regulator FAM172A homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZK44
      UniProtKB/TrEMBL
      A0A8V0YEI6

    RNA

    1. XR_006937423.1 RNA Sequence

    2. XR_006937424.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZK44.1 GenPept UniProtKB/Swiss-Prot:Q5ZK44

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials