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    SLC5A7 solute carrier family 5 member 7 [ Gallus gallus (chicken) ]

    Gene ID: 414870, updated on 17-Aug-2024

    Summary

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    Symbol
    SLC5A7provided by CGNC
    Full Name
    solute carrier family 5 member 7provided by CGNC
    Primary source
    CGNC:12606
    See related
    Ensembl:ENSGALG00010015183
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC5A7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (136158453..136184475)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (136116433..136142426)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene pinopsin-like Neighboring gene uncharacterized LOC121109527 Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 2 Neighboring gene uncharacterized LOC121109029 Neighboring gene sulfotransferase family 1C member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular control of ciliary neuron development: BMPs and downstream transcriptional control in the parasympathetic lineage. Müller F, et al. Development, 2002 Dec. PMID 12421710
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables choline:sodium symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acetylcholine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in choline transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuromuscular synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, cholinergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perikaryon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high affinity choline transporter 1
    Names
    solute carrier family 5 (choline transporter), member 7
    solute carrier family 5 (sodium/choline cotransporter), member 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001763.3 → NP_001001763.1  high affinity choline transporter 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000025
      UniProtKB/TrEMBL
      F1P4Q0
      Related
      ENSGALP00010021331.1, ENSGALT00010036588.1
      Conserved Domains (1) summary
      cd11474
      Location:8 → 495
      SLC5sbd_CHT; Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      136158453..136184475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926564.1 → XP_046782520.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0

    2. XM_046926575.1 → XP_046782531.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0

    3. XM_046926547.1 → XP_046782503.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      136116433..136142426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046906990.1 → XP_046762946.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0

    2. XM_046906991.1 → XP_046762947.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0

    3. XM_046906989.1 → XP_046762945.1  high affinity choline transporter 1 isoform X1

      UniProtKB/TrEMBL
      F1P4Q0
    Nucleotide Protein
    Heading Accession and Version

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